BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB030G07LP1|AL429278
(1055 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig306 916 0.0
>3x_Contig306
Length = 1258
Score = 916 bits (459), Expect = 0.0
Identities = 519/541 (95%), Gaps = 3/541 (0%)
Strand = Plus / Minus
Query: 509 acccattggacggctgcttctctcttgtgctcgtgatgcttcttggcggtagaaaccgtg 568
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 acccattggacggctgtttctctcttgtgctcgtgatgcttcttggcggtagaaaccgtg 1199
Query: 569 gtacatggagcatcttcggcgacttggtctctcttcttgaaactgacggagt-acctggg 627
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1198 gtacatggagcatcttcggcgacttggtctctcttcttgaaactgacggagtcacctggg 1139
Query: 628 tagtaaacaccaaattggaccaagttaattggacctctgawatgaacagacaattcttcg 687
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1138 tagtaaacaccaaattggaccaagttaattggacctctgaaatgaacagacaattcttcg 1079
Query: 688 ttcaatggagcsaaagaaccactgaaggagacagaactttgagaacatacacaggtggac 747
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 ttcaatggagccaaagaaccactgaaggagacagaactttgagaacatacacaggtggac 1019
Query: 748 tcatccatagaagtwacatcagagttatgaccggaataaccaacgttagagttaacaact 807
|||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 1018 tcatccatagaagtaacatcagagtaatgaccggaataaccaacgttagagtaaacaact 959
Query: 808 gcgttggtctcagaacaatagtwattgccatcaacgtaatcacatcctgcgtggacggrg 867
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 958 gcgttggtctcagaacaatagtaattgccatcaacgtaatcacatcctgcgtggacggag 899
Query: 868 gctgccaaaagtgcagttctggcaacagaactaaacttcattgtttgtatgatgttctta 927
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gctgccaaaagtgcagtactggcaacagaactaaacttcattgtttgtatgatgttctta 839
Query: 928 agttcttgttattttctttaaactaaaacacaaaaa-grgagttaawbagttggtggtat 986
|||||||||||||||||||||||||||||||||||| | |||| || |||||||| ||
Sbjct: 838 agttcttgttattttctttaaactaaaacacaaaaaggagagtaaaatagttggtgtaat 779
Query: 987 agcgaagtatctttatcttatacgatcaacccgaaat-atatagggatgarcgtgaagac 1045
||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||
Sbjct: 778 agcaaagtatctttatcttatacgatcaacccgaaataatataggaatgaacgtaaagac 719
Query: 1046 a 1046
|
Sbjct: 718 a 718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8118
Number of Sequences: 1807
Number of extensions: 8118
Number of successful extensions: 370
Number of sequences better than 1.0e-20: 1
length of query: 1055
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1039
effective length of database: 10,329,639
effective search space: 10732494921
effective search space used: 10732494921
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)